Home | Introduction | Metadata | Application | Further reading | Landscape of resources |
1. Introduction
Kubben, P., Dumontier, M. and Dekker, A., (2019). Fundamentals of clinical data science. DOI: 10.1007/978-3-319-99713-1
Ristevski, B. and Chen, M. (2018) Big Data Analytics in Medicine and Healthcare. Journal of Integrative Bioinformatics, Vol. 15 (Issue 3), pp. 20170030. Big Data Analytics in Medicine and Healthcare
Wilkinson, M.D., Dumontier, M., Aalbersberg, I.J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J.W., da Silva Santos, L.B., Bourne, P.E. and Bouwman, J., 2016. The FAIR Guiding Principles for scientific data management and stewardship. Scientific data, 3(1), pp.1-9. https://doi.org/10.1038/sdata.2016.18
2. Metadata
Blog Post FHIR/OMOP by the hyve: omop-fhir-connectathon-reflections
RWD (OMOP) to SDTM (CDISC): A primer for your ETL journey, Ashwini Yermal Shanbhogue: https://www.pharmasug.org/proceedings/2022/RW/PharmaSUG-2022-RW-160.pdf
Metadata Concepts for Advancing the Use of Digital Health Technologies in Clinical Research [Digit Biomark 2019] Sep-Dec; 3(3): 116–132 PMID: 3217552 PMCID: PMC7046173 DOI: 10.1159/000502951 Full Text pdf and Concept Maps
The Generalized Data Model for clinical research by Danese et al (2019) BMC Med Inf & Decis Mak 19:117 PMID: 31234921 PMCID: PMC6591926 DOI: 10.1186/s12911-019-0837-5T. Table Specifications
Learning to Share Health Care Data: A Brief Timeline of Influential Common Data Models… by Weeks & Pardy (2019) EGEMS 25;7(1):4 PMID: 30937326 PMCID: PMC6437693 DOI: 10.5334/egems.279
Evaluating common data models for use with a longitudinal community registry by Garza et al (2016) J Biomed Inform64:333-341 PMID:27989817 PMCID: PMC6810649 DOI:10.1016/j.jbi.2016.10.016
- Further reading on CDISC
- CDISC Collection at FAIRsharing
- CDISC Controlled Terminology and Glossary
- ODM and ODM-XML and ODM Implementation, CDISC data exchange
- Current applications and future directions for the CDISC Operational Data Model standard: A methodological review by Sam Hulme et al (2016) J Biomed Inf 60:352-362 https://doi.org/10.1016/j.jbi.2016.02.016
- An assessment of the suitability of the Clinical Data Interchange Standards Consortium (CDISC) Operational Data Model (ODM) - https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4714951/
- Further reading on OHDSI
- OMOP record in FAIRsharing and OHDSI vocabularies record in FAIRsharing
- Book of OHDSI
- Standardised vocabularies used by OMOP CDM. Available through Athena . Updates on Github. OHDSI standardised vocabularies
